PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G064100.2
Common NameB456_004G064100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 228aa    MW: 25490.5 Da    PI: 4.3649
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G064100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.77.4e-153351347
                        HHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding 13 vdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        +d+++qlG++ W++Ia++++ gRt++++k++w+++
  Gorai.004G064100.2  3 IDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 35
                        89********.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001674.15E-10136No hitNo description
PROSITE profilePS5129423.041140IPR017930Myb domain
SMARTSM007175.3E-6138IPR001005SANT/Myb domain
SuperFamilySSF466893.12E-12245IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-18237IPR009057Homeodomain-like
PfamPF002493.8E-12335IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MVIDLHAQLG NRWSKIASHL PGRTDNEIKN HWNTHIKKKL KKMGIDPLTH KALSSTTTEP  60
QQSQQKNQVS KGGLKSQVVD KSPKEPETSL QSTISEEKSM GSPLFDPMEM MMMMDNVDGF  120
CTDEVPLIEP HEILVPAAPS TSSSCDSSKL LEELQLPDFE WPSDCNTSSD DNNNKKMSLW  180
DDDDFNNTWG DLLSDRSELA LDDSLSSPLI QCPTGMPFDQ EYSWAYI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6189951e-161JX618995.1 Gossypium hirsutum clone NBRI_GE64682 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012473663.11e-165PREDICTED: protein ODORANT1-like
TrEMBLA0A0D2QSS61e-167A0A0D2QSS6_G
STRINGPOPTR_0017s02850.13e-54(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.13e-37myb domain protein 43
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]